Source code for statsmodels.tools.eval_measures

# -*- coding: utf-8 -*-
"""some measures for evaluation of prediction, tests and model selection

Created on Tue Nov 08 15:23:20 2011

Author: Josef Perktold

"""

import numpy as np

[docs]def mse(x1, x2, axis=0): '''mean squared error Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- mse : ndarray or float mean squared error along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asanyarray to convert the input. Whether this is the desired result or not depends on the array subclass, for example numpy matrices will silently produce an incorrect result. ''' x1 = np.asanyarray(x1) x2 = np.asanyarray(x2) return np.mean((x1-x2)**2, axis=axis)
[docs]def rmse(x1, x2, axis=0): '''root mean squared error Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- rmse : ndarray or float root mean squared error along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asanyarray to convert the input. Whether this is the desired result or not depends on the array subclass, for example numpy matrices will silently produce an incorrect result. ''' x1 = np.asanyarray(x1) x2 = np.asanyarray(x2) return np.sqrt(mse(x1, x2, axis=axis))
[docs]def maxabs(x1, x2, axis=0): '''maximum absolute error Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- maxabs : ndarray or float maximum absolute difference along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asanyarray to convert the input. Whether this is the desired result or not depends on the array subclass. ''' x1 = np.asanyarray(x1) x2 = np.asanyarray(x2) return np.max(np.abs(x1-x2), axis=axis)
[docs]def meanabs(x1, x2, axis=0): '''mean absolute error Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- meanabs : ndarray or float mean absolute difference along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asanyarray to convert the input. Whether this is the desired result or not depends on the array subclass. ''' x1 = np.asanyarray(x1) x2 = np.asanyarray(x2) return np.mean(np.abs(x1-x2), axis=axis)
[docs]def medianabs(x1, x2, axis=0): '''median absolute error Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- medianabs : ndarray or float median absolute difference along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asanyarray to convert the input. Whether this is the desired result or not depends on the array subclass. ''' x1 = np.asanyarray(x1) x2 = np.asanyarray(x2) return np.median(np.abs(x1-x2), axis=axis)
[docs]def bias(x1, x2, axis=0): '''bias, mean error Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- bias : ndarray or float bias, or mean difference along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asanyarray to convert the input. Whether this is the desired result or not depends on the array subclass. ''' x1 = np.asanyarray(x1) x2 = np.asanyarray(x2) return np.mean(x1-x2, axis=axis)
[docs]def medianbias(x1, x2, axis=0): '''median bias, median error Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- medianbias : ndarray or float median bias, or median difference along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asanyarray to convert the input. Whether this is the desired result or not depends on the array subclass. ''' x1 = np.asanyarray(x1) x2 = np.asanyarray(x2) return np.median(x1-x2, axis=axis)
[docs]def vare(x1, x2, ddof=0, axis=0): '''variance of error Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- vare : ndarray or float variance of difference along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asanyarray to convert the input. Whether this is the desired result or not depends on the array subclass. ''' x1 = np.asanyarray(x1) x2 = np.asanyarray(x2) return np.var(x1-x2, ddof=ddof, axis=axis)
[docs]def stde(x1, x2, ddof=0, axis=0): '''standard deviation of error Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- stde : ndarray or float standard deviation of difference along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asanyarray to convert the input. Whether this is the desired result or not depends on the array subclass. ''' x1 = np.asanyarray(x1) x2 = np.asanyarray(x2) return np.std(x1-x2, ddof=ddof, axis=axis)
[docs]def iqr(x1, x2, axis=0): '''interquartile range of error rounded index, no interpolations this could use newer numpy function instead Parameters ---------- x1, x2 : array_like The performance measure depends on the difference between these two arrays. axis : int axis along which the summary statistic is calculated Returns ------- mse : ndarray or float mean squared error along given axis. Notes ----- If x1 and x2 have different shapes, then they need to broadcast. This uses numpy.asarray to convert the input, in contrast to the other functions in this category. ''' x1 = np.asarray(x1) x2 = np.asarray(x2) if axis is None: x1 = np.ravel(x1) x2 = np.ravel(x2) axis = 0 xdiff = np.sort(x1 - x2) nobs = x1.shape[axis] idx = np.round((nobs-1) * np.array([0.25, 0.75])).astype(int) sl = [slice(None)] * xdiff.ndim sl[axis] = idx iqr = np.diff(xdiff[sl], axis=axis) iqr = np.squeeze(iqr) #drop reduced dimension if iqr.size == 1: return iqr # else: return iqr # Information Criteria #---------------------
[docs]def aic(llf, nobs, df_modelwc): '''Akaike information criterion Parameters ---------- llf : float value of the loglikelihood nobs : int number of observations df_modelwc : int number of parameters including constant Returns ------- aic : float information criterion References ---------- http://en.wikipedia.org/wiki/Akaike_information_criterion ''' return -2. * llf + 2. * df_modelwc
[docs]def aicc(llf, nobs, df_modelwc): '''Akaike information criterion (AIC) with small sample correction Parameters ---------- llf : float value of the loglikelihood nobs : int number of observations df_modelwc : int number of parameters including constant Returns ------- aicc : float information criterion References ---------- http://en.wikipedia.org/wiki/Akaike_information_criterion#AICc ''' return -2. * llf + 2. * df_modelwc * nobs / (nobs - df_modelwc - 1.) #float division
[docs]def bic(llf, nobs, df_modelwc): '''Bayesian information criterion (BIC) or Schwarz criterion Parameters ---------- llf : float value of the loglikelihood nobs : int number of observations df_modelwc : int number of parameters including constant Returns ------- bic : float information criterion References ---------- http://en.wikipedia.org/wiki/Bayesian_information_criterion ''' return -2. * llf + np.log(nobs) * df_modelwc
[docs]def hqic(llf, nobs, df_modelwc): '''Hannan-Quinn information criterion (HQC) Parameters ---------- llf : float value of the loglikelihood nobs : int number of observations df_modelwc : int number of parameters including constant Returns ------- hqic : float information criterion References ---------- Wikipedia doesn't say much ''' return -2. * llf + 2 * np.log(np.log(nobs)) * df_modelwc #IC based on residual sigma
[docs]def aic_sigma(sigma2, nobs, df_modelwc, islog=False): '''Akaike information criterion Parameters ---------- sigma2 : float estimate of the residual variance or determinant of Sigma_hat in the multivariate case. If islog is true, then it is assumed that sigma is already log-ed, for example logdetSigma. nobs : int number of observations df_modelwc : int number of parameters including constant Returns ------- aic : float information criterion Notes ----- A constant has been dropped in comparison to the loglikelihood base information criteria. The information criteria should be used to compare only comparable models. For example, AIC is defined in terms of the loglikelihood as :math:-2 llf + 2 k in terms of :math:\hat{\sigma}^2 :math:log(\hat{\sigma}^2) + 2 k / n in terms of the determinant of :math:\hat{\Sigma} :math:log(\|\hat{\Sigma}\|) + 2 k / n Note: In our definition we do not divide by n in the log-likelihood version. TODO: Latex math reference for example lecture notes by Herman Bierens See Also -------- References ---------- http://en.wikipedia.org/wiki/Akaike_information_criterion ''' if not islog: sigma2 = np.log(sigma2) return sigma2 + aic(0, nobs, df_modelwc) / nobs
[docs]def aicc_sigma(sigma2, nobs, df_modelwc, islog=False): '''Akaike information criterion (AIC) with small sample correction Parameters ---------- sigma2 : float estimate of the residual variance or determinant of Sigma_hat in the multivariate case. If islog is true, then it is assumed that sigma is already log-ed, for example logdetSigma. nobs : int number of observations df_modelwc : int number of parameters including constant Returns ------- aicc : float information criterion Notes ----- A constant has been dropped in comparison to the loglikelihood base information criteria. These should be used to compare for comparable models. References ---------- http://en.wikipedia.org/wiki/Akaike_information_criterion#AICc ''' if not islog: sigma2 = np.log(sigma2) return sigma2 + aicc(0, nobs, df_modelwc) / nobs #float division
[docs]def bic_sigma(sigma2, nobs, df_modelwc, islog=False): '''Bayesian information criterion (BIC) or Schwarz criterion Parameters ---------- sigma2 : float estimate of the residual variance or determinant of Sigma_hat in the multivariate case. If islog is true, then it is assumed that sigma is already log-ed, for example logdetSigma. nobs : int number of observations df_modelwc : int number of parameters including constant Returns ------- bic : float information criterion Notes ----- A constant has been dropped in comparison to the loglikelihood base information criteria. These should be used to compare for comparable models. References ---------- http://en.wikipedia.org/wiki/Bayesian_information_criterion ''' if not islog: sigma2 = np.log(sigma2) return sigma2 + bic(0, nobs, df_modelwc) / nobs
[docs]def hqic_sigma(sigma2, nobs, df_modelwc, islog=False): '''Hannan-Quinn information criterion (HQC) Parameters ---------- sigma2 : float estimate of the residual variance or determinant of Sigma_hat in the multivariate case. If islog is true, then it is assumed that sigma is already log-ed, for example logdetSigma. nobs : int number of observations df_modelwc : int number of parameters including constant Returns ------- hqic : float information criterion Notes ----- A constant has been dropped in comparison to the loglikelihood base information criteria. These should be used to compare for comparable models. References ---------- xxx ''' if not islog: sigma2 = np.log(sigma2) return sigma2 + hqic(0, nobs, df_modelwc) / nobs #from var_model.py, VAR only? separates neqs and k_vars per equation #def fpe_sigma(): # ((nobs + self.df_model) / self.df_resid) ** neqs * np.exp(ld)
__all__ = [maxabs, meanabs, medianabs, medianbias, mse, rmse, stde, vare, aic, aic_sigma, aicc, aicc_sigma, bias, bic, bic_sigma, hqic, hqic_sigma, iqr]